NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179591_1171095

Scaffold Ga0179591_1171095


Overview

Basic Information
Taxon OID3300024347 Open in IMG/M
Scaffold IDGa0179591_1171095 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1721
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F010858Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0179591_11710952F000315GAGMTLGNAAAARVRLIVWCRDCRHQIEPDPAEMAQQYGAETPVPDWRERLICSRCGSRQVDMVVSGARR
Ga0179591_11710954F010858GGAMPQHLDLSDDEAAALTRELHDIVENDRYPFSPRIQTARAVLNKLRPEPARKPLPPLKVYAPPSKGRYKRRG

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