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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024348 Open in IMG/M |
| Scaffold ID | Ga0244776_10000082 Open in IMG/M |
| Source Dataset Name | 0.2um to 3um size fraction coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 111348 |
| Total Scaffold Genes | 154 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (8.44%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003691 | Metagenome / Metatranscriptome | 473 | Y |
| F004696 | Metagenome | 427 | Y |
| F006935 | Metagenome | 361 | Y |
| F008359 | Metagenome / Metatranscriptome | 334 | Y |
| F012978 | Metagenome / Metatranscriptome | 275 | Y |
| F013759 | Metagenome / Metatranscriptome | 268 | Y |
| F014137 | Metagenome / Metatranscriptome | 265 | Y |
| F016809 | Metagenome / Metatranscriptome | 244 | Y |
| F021108 | Metagenome | 220 | Y |
| F022884 | Metagenome / Metatranscriptome | 212 | Y |
| F031867 | Metagenome | 181 | N |
| F049619 | Metagenome / Metatranscriptome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244776_1000008211 | F016809 | N/A | MSKINNEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGNT |
| Ga0244776_1000008214 | F012978 | N/A | MEFNKTDKDLKQMSDDELFEYLDAKALYLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE |
| Ga0244776_1000008226 | F006935 | N/A | MDKRYAKQIIQWAEEAKETLTIRKEIIIDENVTDEKLGNIIRMMYKAKVETQNETILKTKENTRL |
| Ga0244776_1000008233 | F022884 | N/A | MLTINNLDKIVRYPIGYTFRVKSMVCGHTTYHISLIDGKGGCRDLKLNRIKNKRGKYTISHGNYSLYLKFSDIHNLDFFCKQITRLIC |
| Ga0244776_1000008234 | F014137 | N/A | MLTIKNVQQIIGQEYNEVFNIIGVKEYKQCYEFTLGYDATIKPAVETILLHRKQTDNGMYIMEYNSKTLWLSKSEFDTIDKIIICMQTI |
| Ga0244776_1000008236 | F049619 | N/A | MLTIKNLNKLNNIELGKKNFYVARIEEQFSIDNISLTASQHQYKFELSNMKYAITVTLDRGPKQFVVSHYKLTSSTGKVLYITGKEISNMDIFIDKLRFVALG |
| Ga0244776_1000008241 | F031867 | AGGA | MIVKNEIELSADSLLNTKPTRVETHKEQNYLVYEFDNTELF |
| Ga0244776_1000008247 | F013759 | N/A | VEKIKQDNMKIELGLSVLSKRETLLGVQLTTHNGVSVKDGELCSERVVEFSIGIIFAIFTIGFVSIGNKIETPDNVMKAIEAFESEMDKNK |
| Ga0244776_1000008252 | F003691 | N/A | MYWVERMTPHIVKNYNMNSRMTNEFTETAFNTSRNERPIYRNFAASKLSNSIKPQSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLNNKQLEIVLG |
| Ga0244776_1000008253 | F008359 | N/A | VFKVISKVKMNNMSKSKVNVKSNYDIKKVKRVMRMKNEGFEPTSFEVFKVSGPNKFKKYFVSRKDAKSFIDNYTDTKMTLGIVKNIMNEIKVK |
| Ga0244776_1000008260 | F004696 | N/A | MDYAIKKLKQDEIVLMKKIKSLQDGKPKWAASKQLDEIRSAIQLLERYNDISEQDIENEDEYLKQIFEVHPAKAKA |
| Ga0244776_100000829 | F021108 | N/A | MAQTVTTQMNEFRTLEDGRIVLDGLVWSQHAEKAIEVKDEDNGFKVLNIKLNGVAYYPVGYDKRKKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |