Scaffold Ga0244776

Basic Information
Taxon OID	3300024348 Open in IMG/M
Scaffold ID	Ga0244776_10003254 Open in IMG/M
Source Dataset Name	0.2um to 3um size fraction coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024348 Open in IMG/M

Scaffold ID

Ga0244776_10003254 Open in IMG/M

Source Dataset Name

0.2um to 3um size fraction coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15859
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (67.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15859

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (67.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003422	Metagenome / Metatranscriptome	487	Y
F004840	Metagenome / Metatranscriptome	421	Y
F007644	Metagenome / Metatranscriptome	347	Y
F009530	Metagenome / Metatranscriptome	316	Y
F017995	Metagenome / Metatranscriptome	237	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000325412	F007644	N/A	MLLVSYKDCGLRVILTKSSYFLEYMKLHLISLEQDLEMNPESINVIDIPGQIEATKHLLSVATDIMNNSNERYE
Ga0244776_1000325420	F003422	AGG	MTNELVSSKYTFICDPEECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHAKIQPTQTKEEQMEETTTIGSDAFHSPEVAYNPDLLVTYKVIHGYSDAEYTTSKVTSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYAESEDQETLRAIAEALDIELTRSVDFTCTIEVSGTMEIDLLSDWGNDLEDEVTDNLYVDSQSGRIEIVDTEICHVREA
Ga0244776_1000325430	F004840	N/A	MYKLTCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMANEYSTVNLYTPSGKCYTKVFYRSGMVAVK
Ga0244776_1000325431	F017995	GGA	MARVKELIEIVSAECDECGGAGFIFFGSELAYDVEPCDCISDVADELTVDWVNE
Ga0244776_1000325438	F009530	AGAAG	MTITYSIWQGSRLLSIDNVAHEMKAIDHLIDSLNASNLGKKVKFSANVMTIKTGDNN
Ga0244776_1000325439	F024319	AGG	MTNRIWESLNDYQTESDAKRLGYVSCSAGCGRVTAWTLCVMCGGNYATHNTLGVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244776_10003254

Overview

Ecosystem & Geography

Associated Families

Sequences