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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024348 Open in IMG/M |
| Scaffold ID | Ga0244776_10031088 Open in IMG/M |
| Source Dataset Name | 0.2um to 3um size fraction coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4295 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F027490 | Metagenome / Metatranscriptome | 194 | Y |
| F098944 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244776_100310882 | F006264 | N/A | MEDPSKIFQNKLSSQAEVCARKTLEWLQKDLQGERKLQPDEVYWLSYAAHTLLNIRDSYGKK |
| Ga0244776_100310883 | F001059 | AGGA | MATYDIDSLKEDLPTAKELAQFVYDKTGVSLDLLGKKKEEQYIVAKNALEGKKVPSEYATDDNPYVDKKDQIPCDPVKPLPKRSVDLPDEDSLVHFFGATNMPHPLDPQSDKKVGINFKKYDNGTITYQVMGPLEQVPVGQKVNKYGQTIPEKYSWVDPRTEELLMRRPDGTFTEKGRGLYTYLVGEKGGGVWSLIDRNITSISQKNIADPWA |
| Ga0244776_100310884 | F027490 | GAG | MSYGKVINGGASMRKGLTKGINDKIAGHTGENARREQVAKAVCNAYEVNTVSSQHTNGVKNSGKFTKPSNTSKNYAL |
| Ga0244776_100310886 | F098944 | AGG | MFKEIRPEGSTVTSEEIKQKARDYAKARRAEKKAMKLATGKIEPKEAIETVPVVDEFDMSAFQPRSQKMAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNDFMESLRKV |
| Ga0244776_100310887 | F001915 | AGGAG | MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDKAVFRKHVTVATTVQVFDKGKEFIAVCRGDKLVRTFIGDAAEDTLLAYCWFDRGGYTTYANEEISNAKFHHIDLSLSPRLRVRLINEMIDQHILWAYTWGIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGIECLKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |