NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10128269

Scaffold Ga0244776_10128269


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10128269 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009604Metagenome / Metatranscriptome315Y
F039627Metagenome / Metatranscriptome163N
F079812Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0244776_101282692F009604N/AMIQCGCGNEIHPERYELGYKICLSCGDKSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYTKVSYRKGKASNMAYASRLSTSF
Ga0244776_101282693F039627N/AMTASFYKTVYQRKFKEMPRWKQLAIVEDSTRNNWSGLLTDFVKAVIEEAEKEYANSKSTVANPPNKYVSETDNKSKKIIKKKN
Ga0244776_101282695F079812N/AMSTKYITDGNNRNIGYTKDMGSVTYAHDKNGKDVGYYNASNKTTFDSKGKRYGTGNLTNALVFEAGRKI
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