NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10302698

Scaffold Ga0244776_10302698


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10302698 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021979Metagenome216Y
F050949Metagenome144N
F067472Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_103026982F067472GGAMLTIDNIQNIEGREFQLSSGQKYVIGIVRAYYDHYSFGVFPLKENNVASIKDGIIYKLHRTKKSRRGYKLVAPQMSWQPYAKPENLTLDNFVLELHIQTGLLNAYNRK
Ga0244776_103026983F050949GGAMLTIENRGRLISDSFYDKMGMYWVVDKIIDDTDEYLILIENRKGPKEIFSLKKQNLYGIGYELGLLDDNRHINKNMYKVKTYIPIEIISDKRLLIKRMTEMIDALYDI
Ga0244776_103026984F021979N/AMLTIENINIINSKFAGTPEWQIGEMFIGSQNYIFQIHKRVGEWTIQGIPQASLTIRLHRIKAMDGYVMESGFVRQNYYGRSVYSIDRMKTITDFTMCLDNHIKTIIR
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