NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10360587

Scaffold Ga0244776_10360587


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10360587 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)975
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F013891Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_103605871F013891N/AVFYNKEMALAVRGIKKPVVNLQMDIVKYPEFLCLRLYEDNFIQYTGNKKEMVIDYLQKVKKLIESYGVRCELEGVPSRKVLGQGL
Ga0244776_103605872F000671AGGAMEKILCYCCNKSKNKLAVKKSSLLPINLFLCETCISAKFEPRWVIILSGRQLGPEAVKDFIVKKRYIGADIAASELFV
Ga0244776_103605873F002060N/AMQINYLSIIIAISAALVSGMGTAMIASFRDHRKEQRRRVERDQDLLKMDLKDLKIELYKIEKELTEWKDKYYSAIQELIGIKAELEATLIELGHFEHHLDELDR
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