NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10681559

Scaffold Ga0244776_10681559


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10681559 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)637
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F005504Metagenome / Metatranscriptome398Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_106815591F005504N/AEETGWGGEYEIVRGEVKELLEYENRCYACQSFDTLSYCEDDCGEFCSECNEGSWQDEEAMAKCQTHMVLLETTEKVES
Ga0244776_106815592F000868GAGGMSDPHGIIGNYRKGGIMSFLENENQMVIDATYQEIGEMLVEDWVNSNLDEGQLFADFRFAEMADNNYLKGRFNLFYDLKPGDQYYLEYDEEN
Ga0244776_106815593F021288AGGAGMLGYTQKDLADMTYGVYQADLLIDADENPAIHNYLVMAHDFLQGLWAEGYFDNGSL
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