NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233396_1096392

Scaffold Ga0233396_1096392


Overview

Basic Information
Taxon OID3300024428 Open in IMG/M
Scaffold IDGa0233396_1096392 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 32D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004105Metagenome / Metatranscriptome453Y

Sequences

Protein IDFamilyRBSSequence
Ga0233396_10963921F004105N/AVSLNNTYYSTGTALPSNLSNLKIMVLDDYDRNYYMDLGSSFVVQDKRKFSDVQMLVENKNTFLPHNQMYGSFTQGGHYDLVKNYNFGFYTGENGSGDYSLNVGKDFYFSNKFKLKTSLSHMSEQDTWLGNSSDGILAVGDNNDTNSANIGVAYQLGNNVLTLDYSKGFTDVNTTDNSLIKSFSDIETESYRLAYEIHKDTHTTFGWSFSLPSHITSGTMDLEVAESVNLDGTINYTGI
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