NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10000163

Scaffold Ga0196962_10000163


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10000163 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37936
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009920Metagenome / Metatranscriptome311Y
F027120Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_1000016321F009920AGGAGMYSDWQYVLVQDRAAREQDLAEKMAERGRYARSPGKPSLRARVARRLFALAVAAESEETWRIVWERLEARGRL
Ga0196962_1000016330F027120AGGAGGMNVEAAMVVRAVGGALLIAIVAAVIVTLVSLAMFLREPIYEPTARVWVERDLRVGPPAPGPDTRLSETTPAMVRLAASRPVANETRQSLGLQASSAELLDNLEIRRVPDTTFMDLTYRGADRKMAAQTVNTFARVASERLSDAVGKNLSAVVWEEARVPPAVPEPKPLRNGLLTLVGVWALYAGLTLATLVVLRR
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