Scaffold Ga0209986_10000779

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209986_10000779

Scaffold Ga0209986_10000779

Overview

Basic Information
Taxon OID	3300024433 Open in IMG/M
Scaffold ID	Ga0209986_10000779 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	31326
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (14.63%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Black Sea
Coordinates	Lat. (^o)	44.288	Long. (^o)	34.983	Alt. (m)		Depth (m)	2075
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078921	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209986_1000077923	F078921	GAG	MITVYLDTKDSILLKSKDATFHVLYYILNQTDMERNTWYADKENKQRIMDKLGISPPTLDKHIASLKKRRLILTTETRGKYMLNMSMFST

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