NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256332_1029902

Scaffold Ga0256332_1029902


Overview

Basic Information
Taxon OID3300024484 Open in IMG/M
Scaffold IDGa0256332_1029902 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0256332_10299021F001900GGAMLVQAASGLERLMVGNRNNALLKDSTVAQISAYMYYNAQVISKLTTNKAFQSKFSSVIFAQIDKDFGEYIDALARTRPKSLHHVYEWKKVGNKTARLFKLNLLSQEGLSFKVGYQFTPSKSFVPASKYSRRRHVFANKAEIMENGTPLVISPKHAERLVFEVDGGTVFMPKGQSVKIKRPGGTAATNQFTLAHGKFFSSNLVGLSIRKSGFQRIFNAGMAKSLRIPTNIKRVQFSFSPNAIRAQADAALSQSFGGV
Ga0256332_10299022F001229N/ALDVYRQTEIQDQDTGAIKREWNYHRTIDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLTMREKVTNVRDAAGNVIWAEANFPTETPTVFEVIGTTPVTDPFGNVIAFNSSMKRSENQQIGQ
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