NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256318_1021871

Scaffold Ga0256318_1021871


Overview

Basic Information
Taxon OID3300024485 Open in IMG/M
Scaffold IDGa0256318_1021871 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001106Metagenome / Metatranscriptome776Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0256318_10218711F001106N/AFETLKVAELRKIAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTIEDIEKAADEFSDEAEEILPRFNPDSQPENTMLVRMTRDNHRYDILGFTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA
Ga0256318_10218712F058150N/AMEILVGSNSPVTHKVFWQGQLTDSDSLPVVKIYDITEDPTVSPSINPGTILATLTPVKSEVDAGTYIVYIPLTYTDRQRQLRLNWSYSVGGTSTQKDHKVYVQTPYTDMSQAIDALGLGSDYSDPNSKSYFELCAAERYARKLIESYTGQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNNLTNVNNWTYNTIVSETGFGIRINRANMLDNTVYIANGMVPPSINDTSNGVFSNGSTYKVQGRFGWQEVPDDLI
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