NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255059_10000371

Scaffold Ga0255059_10000371


Overview

Basic Information
Taxon OID3300024486 Open in IMG/M
Scaffold IDGa0255059_10000371 Open in IMG/M
Source Dataset NameMetatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10292
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0255059_1000037125F057035N/AMTEKEFLEKRIPIWLEGEDLHISTPSNMDKSNMHVFLCKKYGYNALFAIRGYYWPGSHVQLYIGEYETPNCTILVTNYIFQYFPDIKYIGFGCHIGEPGEIWKPKVVIARNINCLKDDIRSI
Ga0255059_1000037126F064301N/AMAKTKGITARTVRIPTKIPAYWQIGILFPDGKKISKPKCTLNEIFETYFMGLDKYLSKGLTAEELLDKYKETFKTKEIKIAIHYIDSWSHKWTGKVAWPRESKFIEYLNKRLNND
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