NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255151_1015574

Scaffold Ga0255151_1015574


Overview

Basic Information
Taxon OID3300024496 Open in IMG/M
Scaffold IDGa0255151_1015574 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009598Metagenome / Metatranscriptome315Y
F032633Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0255151_10155741F009598AGGAMLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPQGKVNFEFERIHENDEYGARQAMKMALHFINSKNDSYSIIRDWAQDALLHKTGVVMVSPVRNPITQYKEVEGTRD
Ga0255151_10155742F032633N/AFWDQVEGYSHVRVTWDDIPYENEWGEPFFTQEERDQLSRDFMPWERKCRMEGIPLIGKGVVFPMLEWPTYKSIDFDLRHNEKMERLISFDLGIKNDPTVISFFFRDPTEEIIYLHKQITIPAGETPDEYVHYLLDRETKGVPIALPHDASAQGRYTLTEQSVREVFEDSYGLNCIPGAILNPPNDQGKVTNHKAYGINIMRMGMERGTFMINESCTKFLEEARNYAIDDLGRFSDPDDHIDSARIGVLALIQGHGESVVSRANSFAAKRFAPIEGKVQRI
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Institute for Fundamental Biomedical Research
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