NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255176_1030862

Scaffold Ga0255176_1030862


Overview

Basic Information
Taxon OID3300024507 Open in IMG/M
Scaffold IDGa0255176_1030862 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009063Metagenome / Metatranscriptome323N
F023544Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0255176_10308621F023544GGAGMELNLNNEEAKVNEDYYLKGILEAGVEGVVRHNDKLYNEVKSGTWSQTFKTNNIDYKIGAQDGSRYVQYTQHNTDQIKEYCRQ
Ga0255176_10308622F009063N/AGASIKYSGQAATQGASPNDGRRFGSLYAFAGTRSGNDTDGTSILNLAASDSNDTTSVVNTNTPFNGDLANAGLGYFTFSTGVTLQQFSPFLYKQLVTVAEQRFNAKITNMVVPTSMRTHISDQMPTSRSINRFNPADKGDTISTYEGDFNYTYQIDDSWVMDQTGADNTSALFLNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAAVSPSGAAVTGNRPTAQVKRYLA
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