Scaffold Ga0255187_1000216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255187_1000216

Scaffold Ga0255187_1000216

Overview

Basic Information
Taxon OID	3300024510 Open in IMG/M
Scaffold ID	Ga0255187_1000216 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9470
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030066	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255187_100021618	F030066	GAGG	MGDLHQYFPSKTEEPKPSHNLEHHIHSNQRTWDELVRQSPLNRLRFYDAQLARGIDVDRDRVAELVREVGPTAVLSDRDVIGLIRQLWGEKAVEKLRARAKTEQVQR

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