NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255186_1004064

Scaffold Ga0255186_1004064


Overview

Basic Information
Taxon OID3300024512 Open in IMG/M
Scaffold IDGa0255186_1004064 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1976
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048791Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0255186_10040642F048791AGGAGMAINFSNANLTLAQMRTFVGELSDLDIGFDENDDISTDLVNGFIKEGFQKVVALSNRWPYYQTSYTFGVTEGFRSYSSFVQIQPTAIGSPTKAITDISQIISVVNSDANFQGNALVYIDQARAESIWVGTQDQEGVPAYFSVWANQVNLWPKPDNNYSFTLRGFRNPSLTWMQNEGDPIDISPQLQLPLINYVMARIFQFQEDPEMANEYMRSFERGIAIIQGNLTAPSSNRQLIMSGGLQLTPYDWWWSDTPNLRVLPGAPYPLGVAL
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