NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255294_1063813

Scaffold Ga0255294_1063813


Overview

Basic Information
Taxon OID3300024544 Open in IMG/M
Scaffold IDGa0255294_1063813 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepA_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046325Metagenome / Metatranscriptome151N
F086828Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0255294_10638131F046325N/AIVNGLPDEKAKVHEDQARLAAKMREQGSVRMDGLGQMAARINSRLFFRLQAQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNPARHGLTGGWMGKQKDA
Ga0255294_10638132F086828AGCAGLRTTPYSTALSQLCGLIGVPTSRLTTELASSLNTLFNANVRQVWGAANWPDLSIWGEARFAGNLLTYPNDVAQTSNWTATNVTATANSINNPADNRVTASKLLETVTNGQHKVAQTVTGF
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