NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256306_1048833

Scaffold Ga0256306_1048833


Overview

Basic Information
Taxon OID3300024560 Open in IMG/M
Scaffold IDGa0256306_1048833 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1031
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014838Metagenome / Metatranscriptome259Y
F022636Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0256306_10488332F014838N/AMKETLKKIAKLNDQLNEVKSELQKEFKADLKKIFVANPKLDSVEMYLNNHEFNDGDATSFYIGYEDMRLVIEGEDVEREWDNATKDYKANPLLKSLVQLFGDTQCIHEDLYGDEWEHLSITREEVLKY
Ga0256306_10488333F022636N/AMSTYRRATLQDLAKLGYVPNTEKYSRHIAFAKKYYSPEATTMVMVVHSEYNDNTYDNSFQYIIVYDKDGNELPPLKKTAKECREQWTTEYLPIPNTSHGHYGASESDEPLDDVVIPLTTEVPELYIKEN
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