NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256336_1076401

Scaffold Ga0256336_1076401


Overview

Basic Information
Taxon OID3300024562 Open in IMG/M
Scaffold IDGa0256336_1076401 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019991Metagenome / Metatranscriptome226Y
F095354Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0256336_10764011F095354AGGAGMATITSAALGNGNGSYTTDIVVKDLDMTVSNYVKDRTPITNMAMSKKRKINSTLHIWPNDYFRVPALNAKLEGAAVDSVLLLL
Ga0256336_10764012F019991N/ASEFIKSNRPKVEQFYQVRTQFVQQELEKARQSFADKELSNKAVFTELRDKLSKDWKGASGSFVPGVQTLDLVSSDEYLLGLIRDGMKFREGPKVRNAGGSLAAASKPVAKSKTAQESKAEELQKKAAAGDKGATRDLLATLLTANKQRRR
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