NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255237_1057585

Scaffold Ga0255237_1057585


Overview

Basic Information
Taxon OID3300024564 Open in IMG/M
Scaffold IDGa0255237_1057585 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8d (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)899
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007798Metagenome / Metatranscriptome344Y
F033400Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0255237_10575851F007798N/AMKDTTLKQLVRDRKGDPRGMVIATVIDNTVRFGWSYTNTKAGDRFNKQKAFVIASGRAESGWGQKVKIPHRVGKVLCEMADRSVRYYKGVPLA
Ga0255237_10575852F033400N/AMDTNTTPRTFTYKFNGKKVDANTLVKNLNDDIALTHAINHFREENNMTKARNPYSWWKYVLATMTYFPKGVEYTTVINILNEIAGVTINKSTATLLARATAGNAPCVVRREYAVRLPDLVQNTNLTASFNRNKISKKNGRPAFQFKFENVKEARQVILLNAPEMASLFDLLDKKIA
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