NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255273_1022760

Scaffold Ga0255273_1022760


Overview

Basic Information
Taxon OID3300024565 Open in IMG/M
Scaffold IDGa0255273_1022760 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1417
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017628Metagenome / Metatranscriptome239Y
F041182Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0255273_10227601F017628AGGAMATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKSKEDQYQVAKNALEGKKVPAEFLTDENPYVDRKELIPVDEIRKLPPRSEDLPPVESQVHFFGATNMPHPLDPQSDRKVGINFKKYFDGTITYKVMGPLEQVAVGSRINKYGQNVPEKYTWMDPR
Ga0255273_10227605F041182GAGMQSDELDLKEKAKIAEKLATFESSRAPVISIEHVQNLVKEEDVTADDALDEFLDSLRKV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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