Scaffold Ga0256344_1013517

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256344_1013517

Scaffold Ga0256344_1013517

Overview

Basic Information
Taxon OID	3300024860 Open in IMG/M
Scaffold ID	Ga0256344_1013517 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8d (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1813
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.4271	Long. (^o)	-81.6053	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048272	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256344_10135172	F048272	N/A	MNAHNGRSSKFLRAVILAVATVLATRPLIGIAVAAEDKPVVVANPAGVAVTSGPTTPPGGQASSSSQRVLLVRASQVPLGDNSVIAVSPQEAKRELLGIDGGLFRRSLAEPKVQSVPEQGGWVRGFFKEPKASKLWSFFNPKAPLDTETDLMRSARIFGIRGDAPLPTSMQDPIQVEPVGIRFWQINR

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