NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0256340_1017044

Scaffold Ga0256340_1017044


Overview

Basic Information
Taxon OID3300024865 Open in IMG/M
Scaffold IDGa0256340_1017044 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F012862Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0256340_10170441F012862N/AQDGLSFRIGTSFKPSRSLVPLSGGTKRRHVFINKASVMEAGMPLKISPKNATRLVFESDGETVFMPKGASVVVKRPGGPGVKNQYFLAHSRFFTGQLVNQSIKNSGFQRIFNAGMAKALSLPSVIKKVQYKFSPNLVRSQADSALAAAFGGVL
Ga0256340_10170442F000258GGAGGMTANFKLDAMLELRKFLWNELKTRNIFDEDDYWSDNLNENIIPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQILFTIYSTDFAEINEIRNYMTDQFRRMDESARDINYWSGLSDKFKFHSIFVADISPTAPSEELQGFFSTDVILEIKYSRILDGQGRFL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.