NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256340_1020056

Scaffold Ga0256340_1020056


Overview

Basic Information
Taxon OID3300024865 Open in IMG/M
Scaffold IDGa0256340_1020056 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1688
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008866Metagenome / Metatranscriptome326Y
F014707Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0256340_10200561F014707N/AKFVTSHELASKGPKTPADEFRDGCRNHVDGKEKLIWLCYDCRKFTCTKCYAKDHKRCYADLIENMHEEMKKTNELNLETIRGMREEFLEEVEFMEKKYGYTEHNNPFDVNINLVNKIYDNILALVNQRREETLSKMNNLKENYMKNTQQNISKVKSMIHKADDLDQSLSNELAKMTKQSAFDFCKELLDSNVSSDLADECNEVAVFQRQEFSRIKQSFIDTNTIVFNDSNILIDKCKNLREYLTDKINNFYTNYSKYQSKHAFTVVMNQKEFIVYLIDNNKVTKVTYVNDFVIPCYARWIEISGDKLILTGGEKDFIESLNTTFMFKFRKYDDNEE
Ga0256340_10200562F008866GAGMNVRRRAHSLIYFNDFIYAVSGVDKLEMIKKCEKYDIFHDKWIEIPDLNYARQNAALAIHNQRYLYAFSGYDGFKNVDSYERLDFLKESDGWTMFDIKGVLKDNDITVDIRKNRMGVITLDFDRMLIFGGERNNKEYKEAYIFEFYENKFYQFTDLVRTSNFIMSPVYYNGKYIIFDFLNNIHELNLETLQFEYHIFHKEGENVNL
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