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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024984 Open in IMG/M |
| Scaffold ID | Ga0209914_1011651 Open in IMG/M |
| Source Dataset Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3973 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Africa: Cape Town | |||||||
| Coordinates | Lat. (o) | -33.927 | Long. (o) | 18.452665 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001866 | Metagenome | 624 | Y |
| F007322 | Metagenome | 353 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209914_10116515 | F001866 | GAG | LQSIVVVVGDDDSTLIGDAHSMRIFELAWLIAFGAELEQERAIDRRQYLHPIVVRIKNDDSMSIIIDRDACWPVELTWSRSSLADREQEREIDQRQEHQSMVEGIGDDDATMMLVDRNAFRILELEIS |
| Ga0209914_10116516 | F007322 | GAGG | MIVIDRNACGMGELAWLVAILAELGHERAIITREYLHSIVVAISDEQETSMMVEHQACRAEEHAISIALLLGADRELDSSITIKSIVSHLFHFNLSVSLTTTKR |
| Ga0209914_10116517 | F001866 | AGGA | MAFVSECLKPMVIVVGDDDSALIIDAHSFGIVELAWLIALGAELEQERAIDQRQYLHSMIDGIADDDSMSIIVNRDARWKVELARLRSSLAGAEQEREIDRRQEHQSIVEGIDDDDAMMMLVDRNALGIVELEIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |