NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209930_1027141

Scaffold Ga0209930_1027141


Overview

Basic Information
Taxon OID3300024992 Open in IMG/M
Scaffold IDGa0209930_1027141 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2387
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F062911Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209930_10271414F001866GAGLQSIVAEVSDDDSALVIDAYSSRIFELAWLIAFGAELEQERAIDRRQYLHSMIVGIRDDDSMSIIIDRNACWTIEFTRSRSMLADREQEREIDRRQEHQSMVELIGDDDAMMMLVDRNALRLVELEIS
Ga0209930_10271416F062911N/AMIAAISDEDAIMIVIDRNAIWIVELARLVALLAELGHERAAIIITREYLHSVVPAIDNKQETSMMVEYQAKRIVELAISIAWLLGADRELDSSITIKNIVSHLFQFNLSLSLTLSLSLSLSLSHNDKEMIQAPNCSNQRDEDMKLSLTHETRERHQASKQRAIRSNKNQSMKEQRTASPSLNQPLPHSHEPLLDLHGHDSARCLHALPIHIKRERERE
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