NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210018_1003549

Scaffold Ga0210018_1003549


Overview

Basic Information
Taxon OID3300024995 Open in IMG/M
Scaffold IDGa0210018_1003549 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7565
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039194Metagenome164Y
F071959Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0210018_10035493F071959AGGAGGMASRNYLVMSNDMTLSDKKEYRLNALSAGLERCGLRGIGDIKADIPGLAGIPDANKVARVKLIHNYLITGQWPRSIDQRELTTGTDLVVAPAVDSWLTAPMAAVGNIVSCFQGVAAPQLVQGKLMVCYAVSVESSAVPMPVSRLIFRRGAAGNVQAQFDMEPMGIRWEVDAFFSEVVVIDPQDVFAIQVRCRNATAVAEIVHIHNFLFESAGLVVA
Ga0210018_10035497F039194AGGAGGMPDLYIFKTQVGMFDPVALQNHNVCIHYVQKSYYRKVDFLEGIPAFQCIDITAGAGLAALTVTGRVNVTNLEMADNEFGLWRWYPIDDAQVRLYHPAGIAKYQLRNLQVPVDMNIVLRDPNLVSTEIAVWQNNRPGVEAINGHAFALGAVRLIAIGYRFHSVDLESGKNADPMLVKAIKEGKAPCTDIWCSGRGTGD
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