NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209728_1000015

Scaffold Ga0209728_1000015


Overview

Basic Information
Taxon OID3300024999 Open in IMG/M
Scaffold IDGa0209728_1000015 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - Groundwater D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)180838
Total Scaffold Genes358 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)301 (84.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.55Long. (o)-107.97Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057792Metagenome135Y
F071896Metagenome / Metatranscriptome121N
F098345Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209728_100001512F071896N/AMVTKKTQLLDADTKVRIINNSNSKIHWIQLNGRPITLLKIGTPSTLPFIELENMAYTSDLIQTGDIYVQDKNVFDALGLNVKYEDIKLHTQLKTMLANLNSEELKEEIEKLPNGNKELLAELAVENYNDLKGSVVDAIEDGTKVKVTLIKEDEKANKQNQQKNDK
Ga0209728_1000015164F057792AGGAGGMATTAREKHIASINALLVKHGATLDRWGMYHIGKYKFDTRKVNLKITVNDLKILSTSMSKLTLEEFEKRLKIYVARESESK
Ga0209728_100001595F098345N/AMKEGIPMQKPKNMKNLTHSASKLNILYLGKEIVYTGEGHSLKPYRGEIINIAYYSNLEPVPYAEIKLKIWNNRTVTKIMKLSDVVLVSSIKKSKKSRVAA
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