NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209318_1000068

Scaffold Ga0209318_1000068


Overview

Basic Information
Taxon OID3300025000 Open in IMG/M
Scaffold IDGa0209318_1000068 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - Groundwater E1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)137054
Total Scaffold Genes216 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)191 (88.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071990Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209318_1000068181F071990AGGAGMAEPTTRFRKIPLATTTAALDTAAERLAAIASEAVVSTASGNEADFGTVDISGGAANSGIQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTQNYVANAVVGSYTWATMPETEPAQNVWPTDEGADMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSFKYSYS
Ga0209318_100006887F071990AGGAGMAEPTTRFRKIPLATATTALDTAAERLAAIASEAVVSTGSGNEADFGTVDISGGAANSGVQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTQNYVANAVVGSYTWATMPETEPAQNVWPTDEGADMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSFKYSYS
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