NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209935_1002740

Scaffold Ga0209935_1002740


Overview

Basic Information
Taxon OID3300025006 Open in IMG/M
Scaffold IDGa0209935_1002740 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20312
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0209935_100274015F001866N/AMRIFELAWLIAFGAELEQERAIDRRQYLHPIVVRIKNDDSMSIIIDRDACWPVELTWSRSSLADREQEREIDQRQEHQSMVEGIGDDDATMMLVDRNAFRILELEIS
Ga0209935_10027402F001866N/AMVVDAHSIRKLELAWLISRRAELEQERAIDQRQYLHSPIVGISDDDSMSIIIDRNARWIVELTRLRTSLADGEQEREIDRRQEHESIVVGVGDDDATMMLVDRNASRIAELEMS
Ga0209935_10027406F007322N/AMVGTISDEDAIMIVINRNAIWMLELAWLATFLAELGHERAIITREYLHSMIPAIDNEQETSMMVERQAIRIVELAISMTATFGADRELDSSITIKRIVFHLFHFNLSLSQRQRDDPSSKLLKPKR
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