NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209935_1005792

Scaffold Ga0209935_1005792


Overview

Basic Information
Taxon OID3300025006 Open in IMG/M
Scaffold IDGa0209935_1005792 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10252
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y
F062911Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209935_100579212F001866N/AMVVEVGDDDSTLSIDAYSMRILELAWLSALRAELEQERAIDRRQYLHSMVEGISDDDSMSIIIDRNAHWTVELSWSRSILADGEQEREIDRRQEHQSIVVSIGDDDAMMMLVDRNASRTVEVEIS
Ga0209935_100579216F007322GAGGMIVVDREAEWMLELAWLVAFLAELGHERAAAIIITREYLHSMISASDEQETSMMVEHQASRAVVLAISRAFGQGADRELDSSITIKSIVFHLFHFSLSLTTTKR
Ga0209935_10057929F062911GAGGMIVVDRKVEWILELAWLVAFLAELGHEPAAAIIIITREYLHSMIIELGDEQETSMMVECQARWRIERAISTALLLGADRELDSSITIKSIVSHLFHFDLSLSHNDKEMIQAPNCSNQRDEDLKLSHETRDTRHERHQASKQRATRSNKNQSMKEQRTAPPSLNQPLPHSHEPLLDLHHHS
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