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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025006 Open in IMG/M |
| Scaffold ID | Ga0209935_1011430 Open in IMG/M |
| Source Dataset Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6031 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Africa: Cape Town | |||||||
| Coordinates | Lat. (o) | -33.927 | Long. (o) | 18.452665 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001866 | Metagenome | 624 | Y |
| F007322 | Metagenome | 353 | Y |
| F026045 | Metagenome | 199 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209935_101143010 | F001866 | AGGA | MAFVSECLQPIVAEVGDDDSALIGDAYSLRIVELAWLIAKRAELEQERAIDRRQYLHSMVLGITDDDSMSIIIHCNARWTVELARSRSLDAADREQEREIDRRQEHQSMVVGIDDDDAMMMLVDRNASRILELEIS |
| Ga0209935_10114302 | F007322 | N/A | MVAVISDEDTIMIVIDRNAMWILELAWLVAFLAELGHERAAIIITREYLHSIVVVINDEQEASMLVERQALRVAELAISIAILLGADRELDSSITIKSIVSHLFHFNLSLTATTKR |
| Ga0209935_10114304 | F026045 | N/A | MTIWSPCERVGKPLIGSNHMHSMVSREGDETSMLVECNRPRPAIAATTDRRDVMAFVSERLQSIVDVVGDDDSALIIDAHSLRIVELAWFLALRAELEQERAIDRRQYLHSMIEGIRDDDSMSIIIDRNACWTAEFARLRSSLADGEQERKIDRRQEHQPMVAGIGDDDATMMLVDRNALRNVELETS |
| Ga0209935_10114307 | F001866 | AGGA | MAFVSECLQPIVAEVGDDDSALIGDAYSLRIVELAWLIAKRAELEQERAIDRRQYLHSMVLGITDDDSMSIIIHCNARWTVELARSRSLDAADREQEREIDRRQEHQSMVVGIDDDDAMMMLVDRNASRILELEVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |