NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209319_1022638

Scaffold Ga0209319_1022638


Overview

Basic Information
Taxon OID3300025010 Open in IMG/M
Scaffold IDGa0209319_1022638 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Rifle, Colorado - Groundwater E2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1670
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048726Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209319_10226382F048726AGGAGMATNFIGRSLVANILEQNVTLDMSFINLIVNDSTSTVTLSFDVASANASNNLMVLKTGESRKNIAVPFGKLYYKAAADASYLRIEGLAKAEF

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