NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210014_1040562

Scaffold Ga0210014_1040562


Overview

Basic Information
Taxon OID3300025016 Open in IMG/M
Scaffold IDGa0210014_1040562 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002652Metagenome539Y
F003801Metagenome / Metatranscriptome467Y

Sequences

Protein IDFamilyRBSSequence
Ga0210014_10405622F002652N/AMKNIEASVGAVPTRVEEIRKKTFEKFFQKIKRVKDMEVDVQKRENDFFWEYIQKPISSQEERDDRDFLKRAAHLGFAVEWRTVFQERDEIAEISADISELVGAQKKKNDAEKYAKWKEILEKIEKK
Ga0210014_10405625F003801N/AMKNTKESVYIFSVPIDEIKKHILNRSITKINCIIYKTNKIRNMKYEFDRQMDIAPPPKTNAEQEKKAKKIDNFQEEIRKRWEEVWRLKEEIHTTTDIIYELSQIRRKYMGVAEEEQMSWADIRREIIDGLKKSFCQ
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