NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207901_1013682

Scaffold Ga0207901_1013682


Overview

Basic Information
Taxon OID3300025045 Open in IMG/M
Scaffold IDGa0207901_1013682 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-46 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1124
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9991Long. (o)-144.9989Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071642Metagenome122Y
F098054Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207901_10136822F098054AGGAGMKVKLGQIVNSTDAFNKITTQPMKAAVSFSVVKNLKAISEELAIFEQSRGDLIRKYGKEDDEGNVSIEPSTKGMVEFQKELGELLNLEVDLNGFKKIKLSNLSKCELTPQEMASLEFAIQ
Ga0207901_10136823F071642AGGAGMANLHKYTSEEALNISYASDFEIQSAWTIADSEVSKDVSSYHTVLLQTDYDIYYGFSGNSLDILGTAANNLYLKGGDTIYELAIPHGVADSSNVYLHALRKTSDSATARLVYT
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