Scaffold Ga0207902_1003846

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207902_1003846

Scaffold Ga0207902_1003846

Overview

Basic Information
Taxon OID	3300025046 Open in IMG/M
Scaffold ID	Ga0207902_1003846 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1410
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0454	Long. (^o)	-144.8791	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008452	Metagenome / Metatranscriptome	333	Y
F009368	Metagenome / Metatranscriptome	319	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10038462	F009368	AGGAG	LNDASLTSIMVFHFDAAIQIMGEILTHELVNPEELYEILEYKSKGSDSVQEERLWKMFQSFLIRADRLPADVIPFSPDLRGPDR
Ga0207902_10038464	F008452	AGGAG	LVSHLNICSTNATGLDTSGSVNNTWEKAKVRELVLVEWTDIISDDGWVVAEDCHLPTFYSVGWLEYQDDKVLKISNTLDFDDALEEHKKKEKPIGYSVTCFPVGCVTSLSFLNSRNDVS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.