NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207902_1012081

Scaffold Ga0207902_1012081


Overview

Basic Information
Taxon OID3300025046 Open in IMG/M
Scaffold IDGa0207902_1012081 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-45 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0454Long. (o)-144.8791Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001135Metagenome / Metatranscriptome767Y
F105372Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207902_10120811F001135GGAGMTTIIYKDKKYKLPFVVKSHSTAMVTRTNGQSGQSIDLPCFAACVYDYTMYKTLKTEELDAKTGQQPGFSDNQDEWQIVRNGLNFFRQYFAKEYMVLLD
Ga0207902_10120813F105372AGGMDDGMNKKEIIDWLNWNDVRNTYPKWLWVANGVVIVMALLVILFV

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