NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1000157

Scaffold Ga0207905_1000157


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1000157 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20303
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025591Metagenome201N
F081535Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_100015712F081535AGGAGMGLDAYLIAERSNTTTSVVKGKYEAVDRPTEAVGHVKTGDAELRPSEVCWPIASVRLEIQYWRKHWDLHELINQSYASPDQYNENPMKVYLSSDNLREIAAKIRDYLTEDADPRYRHHTEREEYAKKFDLAADWIEFDGWNRSVYYRGDF
Ga0207905_100015721F025591GAGMITAEISCDIASLAIEAGDTIFTMANDIGSDGGFHVYIYLDPKDIETSEDAELMHSIMDARSNAFQQRLIVGPRQARICWSDCYDPYQTEMNKVIYKDQGRSPYAATLQQGRYDVFCYRGDWHFVRAGDLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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