Scaffold Ga0207905

Basic Information
Taxon OID	3300025048 Open in IMG/M
Scaffold ID	Ga0207905_1000169 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025048 Open in IMG/M

Scaffold ID

Ga0207905_1000169 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18509
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (84.21%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

18509

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (84.21%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0003	Long. (^o)	-144.9998	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0003

Long. (^o)

-144.9998

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F002682	Metagenome / Metatranscriptome	537	Y
F006589	Metagenome / Metatranscriptome	369	Y
F010275	Metagenome / Metatranscriptome	306	Y
F022888	Metagenome / Metatranscriptome	212	N
F024924	Metagenome	204	N
F038424	Metagenome	166	Y
F087763	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_100016916	F024924	GGAGG	MTGKKRLTKSQRSINSAKFDDIKSSKHRIIVSFNDQEKAKRYLRSRGYRYQEIYSHKEDRTLLYKNFKNSWVKLASTFDYLNDNTMEMGTVWNIETI
Ga0207905_100016918	F002593	GGAG	MSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSIAS
Ga0207905_100016919	F087763	GGAG	MAQMRVKDQDLIVEQVVAKIEATELDKFQAREDVKAIRDVIDMRIDAIQQLYYTYKQYEQNIKDDIKELVELVDNFQEVNSLKQSNHYANSTGFRLRNVSNYGSPDVPEYEVDWKLPANTKRELAVKLRMQTMSGDFDVYKLIDELTSEFSS
Ga0207905_100016921	F010275	GGAG	MSNEVNSTVMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED
Ga0207905_100016931	F038424	AGGAGG	MGWTKHLMYIVIIIVLQLINFHAVGYTQHKSDWCDGFYKQYKEGL
Ga0207905_100016934	F022888	AGGA	MNYIYERMMTEGDTAIFDRAELQKFEDYVSSNYETFYDNKASYEVKKDGEKFLVTLFENPVITMEDILLDIRD
Ga0207905_10001695	F006589	GAGG	MLKELLEKKVNSMINTNDLTDMQVWGVMGLIGFISAFIIMWII
Ga0207905_10001697	F002682	AGGA	MGKQIGSDEKPITFTSPIYKNTHGSKGANPRPGFYTQDYRDNWDRIFGKKKTEEKNNDNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207905_1000169

Overview

Ecosystem & Geography

Associated Families

Sequences