NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1007209

Scaffold Ga0207905_1007209


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1007209 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10072092F046006GGAGGVKEYLKPLAKYINFIWLLVIIHFCITVIVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHGNDFK
Ga0207905_10072093F090883GGAGGMVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH
Ga0207905_10072096F004988N/AVPKLVETICPRCDGNGYIRISPVVATVGDSGTEADCTMCEEIITHMGQRISTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
Ga0207905_10072097F003020AGGAGMPDTSRFKSVSVSTSTHNQLESLAKTRFEVPVSIQKVIDFMLTNEMKKKKRAKAS
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