NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1018198

Scaffold Ga0207905_1018198


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1018198 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1179
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031703Metagenome182Y
F044432Metagenome154Y
F053562Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10181981F053562N/AIEFAEWKSKQDYLVKHVDELRADMTDIKRAVFQAKWMLIGALAVIAVTNTGAVTELLSLL
Ga0207905_10181983F044432GAGGMKKKPVIKKNIGKMLETLSPAYSIMKGKGPISGIASALGKTGMSPIGSLALDKREEAKKRKMAMAAGRNAGKAGNNRMTPMTGMMAGGPLKRKKSIDGCAMKGKTRAV
Ga0207905_10181984F031703GAGGMIDKVCPICKTGIKETEATTIKCTTCQAVISEDVQWESKFGYDWVKELK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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