NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1022858

Scaffold Ga0207905_1022858


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1022858 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10228581F000720GAGGMILNKDDKIVRATIPDRMMSTTFTLPIDERKVVGIVNYIADTNGLIPMAFWVKIKPTDSYLDRELRASGKLISRCLQHGESLKDLADTLSQDNIIGQMANYLHKNMDDIIMGVPMDKKQRML
Ga0207905_10228582F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNDTIDTMWHEIEQVKETNISLYQFIEEHGNDFK
Ga0207905_10228583F090883GGAGGMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKKYWEEQSERILRAAGKIH
Ga0207905_10228584F004988N/AMENVPKLVETICPRCDGNGYIRIPPVVAGVFDKSTETDCTMCEEIITHMGQRITVHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
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