NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1051776

Scaffold Ga0207905_1051776


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1051776 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028035Metagenome / Metatranscriptome193N
F046634Metagenome151Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10517761F046634AGGAGMTTQQLFVPYTESKSAEDRIAYVKANPGKYMPKAQYDIIKELKESNKSIHEKLDLVMNEILAKK
Ga0207905_10517762F028035GAGMITYNMEVELEGDTDKCGNYITVQYEFPFSENSVLIERDKEMNRILNKPIIITTSNNNNCQQ
Ga0207905_10517763F076505N/ASFLGVILMIHLDFWTGVLLTITGMVCLLRALPRISEEI

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