Scaffold Ga0207898_1002128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207898_1002128

Scaffold Ga0207898_1002128

Overview

Basic Information
Taxon OID	3300025049 Open in IMG/M
Scaffold ID	Ga0207898_1002128 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2171
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.567	Long. (^o)	-138.6676	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015491	Metagenome	254	Y
F024883	Metagenome	204	Y
F024888	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10021283	F015491	GAG	MKKTKRQRSAKVPARPQVTPRKWSKKTSRIFDKQFDRFLYDELYVPTKKAWGEDDIVKYERNMYGDSK
Ga0207898_10021285	F024888	AGGA	MNLDKIDLKNIHKIVGEMVGAIQKKEMEGKTHDEFAQERGFDNWMEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIQSDQSLREHSYITLPPEAWPTSFIGNKKKKWQPVHKSEFSAEELEVIYDERGVGGEPVEYRW
Ga0207898_10021287	F024883	GAG	MKLKKRKKKNVWEEVSETIEAFKNNPDYAPDPEHVQIYITTKDGGIVELHIGYDGEQKILKTFDSFDSEDDLEEQRIIDRMEDPEGGILLN

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