NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1002634

Scaffold Ga0207898_1002634


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1002634 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1997
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059867Metagenome133N
F067816Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0207898_10026344F059867N/AMVESGFGQNLSLDLTGIMESKIHKALRFPYMISVPDIDESQWTTWLIKTPEDEAELDKYFPEFFEDKPKIIRKYKDKPKDVRMVADYFKEVKIEDPEGSAELFYAHYESVGWFRGKSKIKNWKMCLKNWDFNKKSDAEQKVRPQMYKLECLECGFESETDRKDTRMVCRRCKHRPLMTITNFIK
Ga0207898_10026347F067816AGGAMDVYYDDKTGSIPAVEVDIILVLADYESANLSAPSARREIARNVHRMLLAKNYVIRRKQGSGT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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