NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1018681

Scaffold Ga0207898_1018681


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1018681 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)876
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005821Metagenome / Metatranscriptome389Y
F006185Metagenome379Y
F025152Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0207898_10186811F006185N/AINIKIKNISQRQWPLLLVELNLVAKSWRRFGPIIDVKTKGFDKIIKWGKKRHGEPED
Ga0207898_10186812F005821AGAAGMVKTLIIIILLFNGTVVKDHISFNPPIDVMDCWSFGNMYYEVMSTHRWGDQRGAPDFSIDAMRQGWYLNDGRGTIQGHYCE
Ga0207898_10186813F025152N/AMSNTLYIKFLMRRLIECLKQRQQKDAKELIKKIMEELDRW
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