Scaffold Ga0207906_1014274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207906_1014274

Scaffold Ga0207906_1014274

Overview

Basic Information
Taxon OID	3300025052 Open in IMG/M
Scaffold ID	Ga0207906_1014274 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1111
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207906_10142742	F001334	N/A	MMKFKEYLQLNADDSIEQVMDAEWILKSRSSWKATDDEDNKLEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIFPTT
Ga0207906_10142743	F003285	GAGG	MPDQESFLQLKSEIQTLKIKDEYRSKELDALMSKLDDTSSKLNILSDNISRLLAGQETHKTNDNEVRDELKILHTRIGDLHDKCSEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGVATAIAW

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.