Scaffold Ga0207906_1024291

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207906_1024291

Scaffold Ga0207906_1024291

Overview

Basic Information
Taxon OID	3300025052 Open in IMG/M
Scaffold ID	Ga0207906_1024291 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	839
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002426	Metagenome	560	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207906_10242911	F002426	AGGAG	MAGLQTRTYTLAGSSLTAGTFASISQLLGSSQSTTNPEGMNKVVRISMSCSPDHTSATDGVSVFKFAGDGVSVQQIFAGPSWSNQAAGPLDGNNGMPVVIENAAGIFDIIAGNQIDFSVSCTTAETVDVAVSITYAA
Ga0207906_10242912	F042083	N/A	MASGLAVANYLNQGTSVGIGTLKTGGVIKDTLDGNLNSAFSSLSKNAVDLATSPGGKAVLSSAIVLATAGGLARKWFPSVKLGGTKLYFKI

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